Friday 27 August 2021

MIC-Drop: A CRISPR based technology for genetic identification and screening


Life is full of mysteries ready to be unravelled, full of questions to be answered, and full of issues ready to be resolved with sheer will, commitment and consistency, this is what exists in the realm of science and technology where researchers and powerful scientific minds work hard and fight fearlessly with the challenges of life in an effort to make the world a better place for mankind. The very passion to work and make progress has enabled world to stand a chance against the pandemic currently wreaking havoc around the globe. But challenges faced by humanity will still exist beyond the COVID-19 era and to resolve these issues will be of absolute necessity. Many of the diseases that have been around for centuries will so remain with us (including cardio vascular, neurological and other) and an imminent solution will be needed for these challenges.

In order to address these issues a group of scientist working at the University of Utah, USA has started their work on development of a new technology which enables better understanding of genetic basis of such diseases and screening of such genes resulting in to development of a cure. The researchers have used an approach that combines aspect of genetic engineering, biotechnology,  and material sciences, and is called the MIC-Drop (Multiplexed Intermixed CRISPR Droplets). The study was lead by Dr. Randall Peterson who tells that this technology will help in resolving key issues in genetic screening studies and will ultimately enable genome-sale screening.

MIC-Drop 
Courtesy: University of Utah



THE ISSUE:

Gene editing technology has been used in screening genes but the overall impact for such studies was quite limited as each of the gene would have to be treated separately with each requiring its unique Ribo-Nucliec combination making the whole

Dr. Randall Peterson, University of Utah

process exhausting and time consuming. Dr. Randall Peterson said:

“The process has always been focused on a single gene or a single modification at a time So if you want to do 100 genes, it's 100 times as much work”.

 

THE SOLUTION:

In order to deal with the issue the Team of Dr. Randall Peterson came up with an innovative idea of MIC-Drop technology, in this the team first prepared a large number of gRNA’s and protein molecules followed by packaging of these components in to micro-droplets and each of the droplet was given a unique identity inform of a DNA barcode. The chemical properties of droplets was engineered in order to make them stable and prevent any intermingle of their particular material contents while delivering in to host cell systems. The drops are delivered in to separate embryo cells using specific microscopic needle and the development for each of the cell is monitored later on.

THE SUCCESS STORY:

In order to demonstrate the potential of this tech the team worked in collaboration with researchers from Harvard Medical School and Massachusetts General Hospital, the work was focused on testing about 188 genes in zebra fish associated with heart development, for the experiment each embryo cell was loaded with its unique CRISPR containing drop, many of the resulting fish developed some sort of heart issue and a total of 13 genes were screened out associated with this issue. Indicating towards many aspect of heart development which were previously unknown.

Dr. Saba Parvez said:

“Previously, setting up a CRISPR screen of hundreds of genes in zebra fish would have taken a team of researchers many days and required hundreds of needles, Now you have streamlined that process into one user doing it in a span of a couple of hours,”

 

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